Changeset 31515 for trunk/ippScripts/scripts/lap_science.pl

Timestamp:

May 10, 2011, 4:43:58 PM (15 years ago)

Author:

watersc1

Message:

missed cases for quality flagging.

File:

• trunk/ippScripts/scripts/lap_science.pl (modified) (1 diff)

trunk/ippScripts/scripts/lap_science.pl

@@ -475 +475 @@
         }
         # Do quality checks here
-        if ((($exposure->{chipRun_state} eq 'full')&&($exposure->{chip_bad_quality} / $exposure->{chip_component_count} > 0.05)) ||
-            (($exposure->{camRun_state} eq 'full')&&($exposure->{cam_bad_quality} / $exposure->{cam_component_count} > 0)) ||
-            (($exposure->{warpRun_state} eq 'full')&&($exposure->{warp_bad_quality} / $exposure->{warp_component_count} > 0.2)) ||
-            (($exposure->{diffRun_state} eq 'full')&&($exposure->{diff_bad_quality} / $exposure->{diff_component_count} > 0.5)))  {
-            printf( "QUALITY: $exposure->{exp_id} has bad quality fractions: chip: %d/%d cam: %d/%d warp: %d/%d diff: %d/%d\n",
-                    $exposure->{chip_bad_quality} , $exposure->{chip_component_count},
-                    $exposure->{cam_bad_quality} , $exposure->{cam_component_count},
-                    $exposure->{warp_bad_quality} , $exposure->{warp_component_count},
+        my $is_bad_quality = 0;
+        if ((defined($exposure->{chipRun_state}))&&($exposure->{chipRun_state} eq 'full')&&
+            ($exposure->{chip_component_count} > 0)&&($exposure->{chip_bad_quality} / $exposure->{chip_component_count} > 0.05)) {
+            printf("QUALITY: $exposure->{exp_id} has bad chip quality: %d / %d\n",
+                   $exposure->{chip_bad_quality} , $exposure->{chip_component_count});
+            $is_bad_quality = 1;
+        }
+        elsif ((defined($exposure->{camRun_state}))&&($exposure->{camRun_state} eq 'full')&&
+               ($exposure->{cam_bad_quality} / $exposure->{cam_component_count} > 0)) {
+            printf("QUALITY: $exposure->{exp_id} has bad cam quality: %d / %d\n",
+                   $exposure->{cam_bad_quality} , $exposure->{cam_component_count});
+            $is_bad_quality = 1;
+        }
+        elsif ((defined($exposure->{warpRun_state}))&&($exposure->{warpRun_state} eq 'full')&&
+               ($exposure->{warp_bad_quality} / $exposure->{warp_component_count} > 0.2)) {
+            printf("QUALITY: $exposure->{exp_id} has bad warp quality: %d / %d\n",
+                   $exposure->{warp_bad_quality} , $exposure->{warp_component_count});
+            $is_bad_quality = 1;
+        }
+        elsif ((defined($exposure->{diffRun_state}))&&($exposure->{diffRun_state} eq 'full')&&
+               ($exposure->{diff_bad_quality} / $exposure->{diff_component_count} > 0.5)) {
+            printf("QUALITY: $exposure->{exp_id} has bad diff quality: %d / %d\n",
                     $exposure->{diff_bad_quality} , $exposure->{diff_component_count});
-
-            unless ($exposure->{diffRun_state} eq 'full') {
+            $is_bad_quality = 1;
+        }
+        if ($is_bad_quality) {
+            unless ((defined($exposure->{diffRun_state}))&&
+                    ($exposure->{diffRun_state} eq 'full')) {
                 $needs_qstack = 1;
                 $needs_something_private = 1;