Changeset 37833 for trunk/ippScripts/scripts/sc_prepare_stack.pl

Timestamp:

Jan 12, 2015, 12:53:36 PM (11 years ago)

Author:

eugene

Message:

merging changes from ipp-pv3-20140717 (via branches/eam_branches/ipp-pv3-20140717-merge)

Location:

trunk/ippScripts/scripts

Files:

• . (modified) (1 prop)
• sc_prepare_stack.pl (modified) (15 diffs)

trunk/ippScripts/scripts/sc_prepare_stack.pl

@@ -1 +1 @@
 #! /usr/bin/env perl
+
+# generate the input & output files lists and commands for a single stackRun
 
 use Carp;
@@ -16 +18 @@
 use Pod::Usage qw( pod2usage );
 
-
 # Hard coded values
-#my $remote_root   = '/scratch3/watersc1/';  # Far side destination base location
-my $remote_root   = '/lustre/scratch1/turquoise/watersc1/ps1/'; # Far side destination base location
-$remote_root = '/scratch3/watersc1/';
-my $threads       = 2;                      # How many threads are we going to use?
-my $job_cost      = 1500 / 60 / 60;           # Estimate of how long a job runs, in hours.
-my $proc_per_node = 24;                     # processors per node
-my $min_nodes     = 1;                      # smallest allocation to ask for
-my $max_nodes     = 1000;                   # largest allocation to ask for
-my $min_time      = 1;                      # shortest allocation to ask for
-my $max_time      = 8;                      # longest allocation to ask for
-my $remote_hostname   = "LANL/Mustang";         # Name of the remote node.
-my @return_component_list = ("DBINFO.EXP", "PPSTACK.UNCONV","PPSTACK.UNCONV.MASK","PPSTACK.UNCONV.VARIANCE",
-                             "PPSTACK.UNCONV.EXP","PPSTACK.UNCONV.EXPWT","PPSTACK.UNCONV.EXPNUM","PSPHOT.OUTPUT",
-                             "LOG.EXP", "PSASTRO.STATS",
-                             "PPSTACK.CONFIG","PPSTACK.TARGET.PSF","PSPHOT.STACK.PSF.SAVE");
-#,"PPSTACK.CONV.KERNEL");
+# my $remote_root   = '/lustre/scratch1/turquoise/watersc1/ps1/'; # Far side destination base location
+my $remote_root     = '/scratch3/watersc1/';  # Far side destination base location
+my $remote_hostname = "LANL/Mustang";         # Name of the remote node.
+my $threads_req     = 4;                      # How many threads are we going to use?
+
+my $fail_state = "prep_fail";
+
 # Look for programs we need
 my $missing_tools;
-
 my $remotetool = can_run('remotetool') or (warn "Can't find remotetool" and $missing_tools = 1);
-my $stacktool    = can_run('stacktool') or (warn "Can't find warptool" and $missing_tools = 1);
+my $stacktool    = can_run('stacktool') or (warn "Can't find stacktool" and $missing_tools = 1);
 
 if ($missing_tools) {
@@ -48 +39 @@
 GetOptions(
     'remote_id=s'    => \$remote_id,
+    'stack_id=s'     => \$stack_id,
     'camera|c=s'     => \$camera,
     'dbname|d=s'     => \$dbname,
@@ -56 +48 @@
 
 pod2usage( -msg => "Unknown option: @ARGV", -exitval => 2 ) if @ARGV;
-pod2usage( -msg => "Required options: --remote_id --camera --dbname --path_base", -exitval => 3) unless
+pod2usage( -msg => "Required options: --remote_id --stack_id --camera --dbname --path_base", -exitval => 3) unless
     defined($remote_id) and
+    defined($stack_id) and
     defined($camera) and
     defined($path_base) and
     defined($dbname);
-my $ipprc = PS::IPP::Config->new( $camera ) or my_die( "Unable to set up", $remote_id);
+
+my $ipprc = PS::IPP::Config->new( $camera ) or &my_die( "Unable to set up", $remote_id, $stack_id, $PS_EXIT_CONFIG_ERROR, $fail_state);
 
 my $mdcParser = PS::IPP::Metadata::Config->new; # Parser for metadata config files
 
-#
-# Step 1: Get a list of the components that make up this remoteRun
-
-# SHould this call listrun to ensure we're in state new?
-my $rt_cmd = "$remotetool -listcomponent -remote_id $remote_id";
-$rt_cmd   .= " -dbname $dbname " if defined($dbname);
-
-my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) =
-    run(command => $rt_cmd, verbose => $verbose);
-unless ($success) {
-    $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR);
-    &my_die("Unable to run remotetool to determine stage parameters.",
-            $remote_id,$error_code);
-}
-my $compData = $mdcParser->parse(join "", @$stdout_buf) or
-    &my_die("Unable to determine component information.",
-            $remote_id,$PS_EXIT_PROG_ERROR);
-my $compData2= parse_md_list($compData);
-
-#
-# Step 1b: Open output files
-my $uri_command = $path_base . ".cmd";
+my @return_component_list = ("DBINFO.EXP", "PPSTACK.UNCONV","PPSTACK.UNCONV.MASK","PPSTACK.UNCONV.VARIANCE",
+                             "PPSTACK.UNCONV.EXP","PPSTACK.UNCONV.EXPWT","PPSTACK.UNCONV.EXPNUM",
+                             "PSPHOT.OUT.CMF.MEF", # Use this output product to get the one that exists.
+                             "LOG.EXP", "PSASTRO.STATS",
+                             "PPSTACK.CONFIG","PPSTACK.TARGET.PSF","PSPHOT.STACK.PSF.SAVE");
+#,"PPSTACK.CONV.KERNEL");
+
+# STEP 0: Open output files
 my $uri_transfer= $path_base . ".transfer";
 my $uri_check   = $path_base . ".check";
@@ -93 +73 @@
 my $uri_return  = $path_base . ".return";
 
-my $disk_command = $ipprc->file_resolve($uri_command,1);
 my $disk_transfer= $ipprc->file_resolve($uri_transfer,1);
 my $disk_check   = $ipprc->file_resolve($uri_check,1);
@@ -100 +79 @@
 my $disk_return  = $ipprc->file_resolve($uri_return,1);
 
-my (undef, $remote_config) = uri_convert($uri_config); # Needs to be done after we've created it.
-
-open(TRANSFER, ">$disk_transfer")  || &my_die("Couldn't open file? $disk_transfer",$remote_id,$PS_EXIT_SYS_ERROR);
-open(CHECK,    ">$disk_check")  || &my_die("Couldn't open file? $disk_check",$remote_id,$PS_EXIT_SYS_ERROR);
-open(CONFIG,   ">$disk_config")  || &my_die("Couldn't open file? $disk_config",$remote_id,$PS_EXIT_SYS_ERROR);
-open(GENERATE, ">$disk_generate") || &my_die("Couldn't open file? $disk_generate",$remote_id,$PS_EXIT_SYS_ERROR);
-open(RETURN,   ">$disk_return") || &my_die("Couldn't open file? $disk_return", $remote_id, $PS_EXIT_SYS_ERROR);
-
-
-#
-# Step 2: Iterate over all componenets in this remote run.
+my (undef, $remote_config) = &uri_convert($uri_config); # Needs to be done after we've created it.
+
+open(TRANSFER, ">$disk_transfer")  || &my_die("Couldn't open file? $disk_transfer",$remote_id, $stack_id, $PS_EXIT_SYS_ERROR, $fail_state);
+open(CHECK,    ">$disk_check")     || &my_die("Couldn't open file? $disk_check",   $remote_id, $stack_id, $PS_EXIT_SYS_ERROR, $fail_state);
+open(CONFIG,   ">$disk_config")    || &my_die("Couldn't open file? $disk_config",  $remote_id, $stack_id, $PS_EXIT_SYS_ERROR, $fail_state);
+open(GENERATE, ">$disk_generate")  || &my_die("Couldn't open file? $disk_generate",$remote_id, $stack_id, $PS_EXIT_SYS_ERROR, $fail_state);
+open(RETURN,   ">$disk_return")    || &my_die("Couldn't open file? $disk_return",  $remote_id, $stack_id, $PS_EXIT_SYS_ERROR, $fail_state);
+
 my $job_index = 0;
-my @pre_commands = ();
-my @main_commands = ();
-my @post_commands = ();
-my %file_filter = ();
-
-
-foreach my $compEntry (@$compData2) {
-    my $stack_id = $compEntry->{stage_id};
-
-# Get exposure level information from the stackRun we're working from.
-    my $run_command = "$stacktool -tosum -stack_id $stack_id";
-    $run_command .= " -dbname $dbname " if defined($dbname);
-    ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) =
-        run(command => $run_command, verbose => 0);
+
+# STEP 1: Get exposure level information from the stackRun we're working from.
+my ($reduction, $workdir, $tess_id, $skycell_id);
+{
+    my $command = "$stacktool -tosum -stack_id $stack_id";
+    $command .= " -dbname $dbname " if defined($dbname);
+    my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) =
+        run(command => $command, verbose => $verbose);
     unless ($success) {
-        $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR);
-        &my_die("Unable to run stacktool -tosum ",
-                $stack_id,$error_code);
-    }
-
-    my $stackData = $mdcParser->parse(join "", @$stdout_buf) or
-        &my_die("Unable to determine stack component information.",
-                $stack_id,$PS_EXIT_PROG_ERROR);
-    my $stackData2= parse_md_list($stackData);
-
-    my $stack = ${ $stackData2 }[0];
-    my $reduction = $stack->{reduction};
+        $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR);
+        &my_die("Unable to run stacktool -tosum ", $remote_id, $stack_id, $error_code, $fail_state);
+    }
+
+    my $MDlist = $mdcParser->parse(join "", @$stdout_buf) or
+        &my_die("Unable to determine stack component information.", $remote_id, $stack_id, $PS_EXIT_PROG_ERROR, $fail_state);
+    my $metadata = parse_md_list($MDlist);
+
+    my $stack = $metadata->[0];
+
+    $reduction = $stack->{reduction};
     $reduction = 'DEFAULT' unless defined($reduction);
-    my $workdir   = $stack->{workdir};
-    my $tess_id   = $stack->{tess_id};
-    my $skycell_id= $stack->{skycell_id};
-
-    my $ipp_outroot    = "${workdir}/${tess_id}/${skycell_id}/${tess_id}.${skycell_id}.stk.${stack_id}";    
-    my $remote_outroot = uri_local_to_remote($ipp_outroot);    
-    my $remote_outdir  = uri_local_to_remote("${workdir}/${tess_id}/${skycell_id}");
+    $workdir   = $stack->{workdir};
+    $tess_id   = $stack->{tess_id};
+    $skycell_id= $stack->{skycell_id};
+}
+my $ipp_outroot    = "${workdir}/${tess_id}/${skycell_id}/${tess_id}.${skycell_id}.stk.${stack_id}";
+my $remote_outroot = &uri_local_to_remote($ipp_outroot);
+my $remote_outdir  = &uri_local_to_remote("${workdir}/${tess_id}/${skycell_id}");
+
+# STEP 2: Get the list of input warps
+my ($warpData);
+{
     # This actually returns all the individual stack/skyfiles that comprise this run.  Because consistency.
     my $command = "$stacktool -inputskyfile -stack_id $stack_id ";
     $command .= " -dbname $dbname " if defined($dbname);
-    ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) =
-        run(command => $command, verbose => 0);
+    my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) =
+        run(command => $command, verbose => $verbose);
     unless ($success) {
-        $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR);
-        &my_die("Unable to run stacktool -inputskyfile ",
-                $stack_id,$error_code);
-    }
-
-    my $warpData = $mdcParser->parse(join "", @$stdout_buf) or
-        &my_die("Unable to determine stack component information.",
-                $stack_id,$PS_EXIT_PROG_ERROR);
-    my $warpData2= parse_md_list($warpData);
-
-#
-# Step 3: Iterate over the sub-components
+        $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR);
+        &my_die("Unable to run stacktool -inputskyfile ", $remote_id, $stack_id, $error_code, $fail_state);
+    }
+
+    my $MDlist = $mdcParser->parse(join "", @$stdout_buf) or
+        &my_die("Unable to determine stack component information.", $remote_id, $stack_id, $PS_EXIT_PROG_ERROR, $fail_state);
+    $warpData = parse_md_list($MDlist);
+}
+
+# STEP 3: Iterate over the sub-components
+{
+    # Generate a file mapping the symbolic and "disk" representations of each needed file.
+    my $uri_compmap   = "${ipp_outroot}.compmap";
+    my $component_map = $ipprc->file_resolve($uri_compmap,1);    
+    my ($ipp_compmap, $remote_compmap) = &uri_to_outputs($component_map);
+    open(COMPMAP,">$ipp_compmap") || &my_die("Couldn't open file? $ipp_compmap",  $remote_id, $stack_id, $PS_EXIT_SYS_ERROR, $fail_state);
+    
+    # Loop over all needed components for this stack.
     my $warp_path_base_string = "";
-    foreach my $warpEntry ( @{ $warpData2 } ) {
-        my $warp_path_base = $warpEntry->{path_base};
-        my $remote_path_base = uri_local_to_remote($warp_path_base);
-        $warp_path_base_string .= " $remote_path_base ";
-
-        # Append file names to transfer lists so we can recover if warps are deleted.
-        uri_to_outputs($warp_path_base . ".fits");
-        uri_to_outputs($warp_path_base . ".wt.fits");
-        uri_to_outputs($warp_path_base . ".mask.fits");
-        uri_to_outputs($warp_path_base . ".cmf");
-#       uri_to_outputs($warp_path_base . ".psf");
-    }
-    my $mk_mdc_command = "mkdir -p $remote_outdir && sc_mk_stack_mdc.pl $warp_path_base_string > ${remote_outroot}.in.mdc";
-    my $recipe_ppstack = $ipprc->reduction($reduction, 'STACK_PPSTACK'); # Recipe to use                                                                          
+    foreach my $warpEntry ( @{ $warpData } ) {
+        my $warp_path_base = $warpEntry->{path_base};
+        my $remote_path_base = &uri_local_to_remote($warp_path_base);
+        $warp_path_base_string .= " $remote_path_base ";
+
+        if ($verbose) { print STDERR "$warp_path_base_string\n"; }
+
+        # Append file names to transfer lists so we can recover if warps are deleted.
+        my $remote_file;
+        my $ipp_disk;
+        #  ${remote_root}/tmp/${ipp_disk}
+        (undef,$remote_file) = &uri_to_outputs($warp_path_base . ".fits");
+        ($ipp_disk,undef)    = &uri_convert($warp_path_base . ".fits");
+        print COMPMAP "$remote_file ${remote_root}/tmp/${ipp_disk}\n";
+        (undef,$remote_file) = &uri_to_outputs($warp_path_base . ".wt.fits");
+        ($ipp_disk,undef)    = &uri_convert($warp_path_base . ".wt.fits");
+        print COMPMAP "$remote_file ${remote_root}/tmp/${ipp_disk}\n";
+        (undef,$remote_file) = &uri_to_outputs($warp_path_base . ".mask.fits");
+        ($ipp_disk,undef)    = &uri_convert($warp_path_base . ".mask.fits");
+        print COMPMAP "$remote_file ${remote_root}/tmp/${ipp_disk}\n";
+        (undef,$remote_file) = &uri_to_outputs($warp_path_base . ".cmf");
+        ($ipp_disk,undef)    = &uri_convert($warp_path_base . ".cmf");
+        print COMPMAP "$remote_file ${remote_root}/tmp/${ipp_disk}\n";
+        (undef,$remote_file) = &uri_to_outputs($warp_path_base . ".psf");
+        ($ipp_disk,undef)    = &uri_convert($warp_path_base . ".psf");
+        print COMPMAP "$remote_file ${remote_root}/tmp/${ipp_disk}\n";
+    }
+
+    close(COMPMAP);
+
+    my $mk_mdc_command = "mkdir -p $remote_outdir && sc_mk_stack_mdc.pl --compmap ${remote_root}/tmp/${component_map} $warp_path_base_string > ${remote_outroot}.in.mdc";
+    my $recipe_ppstack = $ipprc->reduction($reduction, 'STACK_PPSTACK'); # Recipe to use
     my $ppstack_command  = " ppStack -input ${remote_outroot}.in.mdc ";
     $ppstack_command    .= " ${remote_outroot} -stats ${remote_outroot}.stats ";
@@ -191 +188 @@
     $ppstack_command    .= " -R PPSTACK.UNCONV.VARIANCE FITS.TYPE COMP_STACK";
     $ppstack_command    .= " -tracedest ${remote_outroot}.trace -log ${remote_outroot}.log ";
-    $ppstack_command    .= " -threads 4 ";
+    $ppstack_command    .= " -threads $threads_req ";
     $ppstack_command    .= " -dumpconfig ${remote_outroot}.mdc ";
     $ppstack_command    .= " -stack_id $stack_id -skycell_id $skycell_id -tess_id $tess_id ";
@@ -199 +196 @@
     $post_cmd_echo   .=  " -dbname $dbname " if defined $dbname;
     $post_cmd_echo   .= " -hostname $remote_hostname -dtime_script 0 \" > ${remote_outroot}.dbinfo ";
-        
+
     my $post_cmd_SfM  = " ppStatsFromMetadata ${remote_outroot}.stats - STACK_SKYCELL >> ${remote_outroot}.dbinfo ";
 
@@ -207 +204 @@
     # Determine which output files need to be returned
     foreach my $component(@return_component_list) {
-        my $filename = $ipprc->filename($component,$ipp_outroot);
-        my ($ipp_disk, $remote_disk) = uri_to_outputs_for_return( $filename);
-        my $remote_outroot_dir = dirname($ipp_disk);
-        print CONFIG " && mkdir -p ${remote_root}/tmp/${remote_outroot_dir} && ln -sf $remote_disk ${remote_root}/tmp/${ipp_disk} && touch $remote_disk ";
-    }
-
-#     my $cleanup_cmd   = " (rm -f /scratch3/watersc1/sys_temp/${tess_id}.${skycell_id}.stk.${stack_id}.*conv.*.fits || true) ";    
-#     print CONFIG " && ${cleanup_cmd} \n";
-
+        my $filename = $ipprc->filename($component,$ipp_outroot);
+        my ($ipp_disk, $remote_disk) = &uri_to_outputs_for_return( $filename);
+        my $remote_outroot_dir = dirname($ipp_disk);
+        print CONFIG " && mkdir -p ${remote_root}/tmp/${remote_outroot_dir} && ln -sf $remote_disk ${remote_root}/tmp/${ipp_disk} && touch $remote_disk ";
+    }
     print CONFIG "\n";
 }
@@ -224 +217 @@
 close(GENERATE);
 
-#
-# Construct the moab command last, so we can use the job_index counter to estimate resources.  Somehow.
-my $proc_need = $job_index * $threads;       # how many total processors do we need?
-my $node_need = $proc_need / $proc_per_node; # this equals how many nodes?
-my $time_need = $job_index * $job_cost;      # How many seconds will this take?
-
-my $fill_factor = 0.8;  # This is the factor of how much of the time allocation we'd like to fill
-my ($time_req,$node_req);
-if ($node_need * $job_cost < $fill_factor * $min_nodes * $min_time) {
-    $time_req = $min_time;
-    $node_req = $min_nodes;
-}
-elsif ($node_need * $job_cost > $fill_factor * $max_nodes * $max_time) {
-    $time_req = $max_time;
-    $node_req = $max_nodes;
-    print STDERR "You've requested the construction of a bundle that appears to need $node_need nodes and $job_cost time per job.  This exceeds the max limits ($max_nodes, $max_time).  Using those max values instead.  Good luck.\n";
-}
-else {
-    $time_req = int(($node_need * $job_cost) / ($fill_factor * $max_nodes)) + 1;
-    $node_req = int(($node_need * $job_cost) / ($fill_factor * $time_req)) + 1;
-}
-
-$time_req += 2;
-$node_req *= 3;
-open(COMMAND,  ">$disk_command") || &my_die("Couldn't open file? $disk_command",$remote_id,$PS_EXIT_SYS_ERROR);
-print COMMAND "#!/bin/tcsh\n";
-print COMMAND "##### Moab controll lines\n";
-print COMMAND "#MSUB -l nodes=${node_req}:ppn=${proc_per_node},walltime=${time_req}:00:00\n"; ## CHECK RESOURCES
-print COMMAND "#MSUB -j oe\n";
-print COMMAND "#MSUB -V\n";
-print COMMAND "#MSUB -o ${remote_root}stack.${remote_id}.out\n";
-print COMMAND "date\n";
-print COMMAND 'srun -n $SLURM_JOB_NUM_NODES -m cyclic -l /bin/hostname | sort -n | awk \'{printf "%s\n", $2}\' > hosts.${SLURM_JOB_ID}' . "\n";
-print COMMAND "${remote_root}/stask_chip.py $remote_config " . 'hosts.${SLURM_JOB_ID} 3' . "\n";
-print COMMAND "date\n";
-close(COMMAND);
-
 unless($no_update) {
-    my $command = "remotetool -updaterun -remote_id $remote_id ";
-    $command .= " -set_state pending ";
+    my $command = "remotetool -updatecomponent -remote_id $remote_id -stage_id $stack_id ";
+    $command .= " -set_jobs $job_index";
+    $command .= " -set_path_base $path_base";
+    $command .= " -set_state prep_done";
     $command .= " -dbname $dbname " if defined $dbname;
 
@@ -269 +227 @@
 }
 
-
 ## Common SC routines
 
+# KEEP
 sub uri_convert { # (ipp_disk,remote_disk) = uri_convert(neb_uri);
     my $neb_uri = shift;
     my $ipp_disk= $ipprc->file_resolve( $neb_uri );
     my $remote_disk = $ipp_disk;
-    
+
     unless(defined($ipp_disk)) {
-        my_die();
+        &my_die( "Unable to generate file for $neb_uri ", $remote_id, $stack_id, $PS_EXIT_SYS_ERROR, $fail_state);
     }
 
@@ -288 +246 @@
 }
 
+# KEEP
 sub uri_convert_and_create { # (ipp_disk,remote_disk) = uri_convert_and_create(neb_uri); ipp_disk is created if it doesn't exist
     my $neb_uri = shift;
     my $ipp_disk= $ipprc->file_resolve( $neb_uri , 1);
     my $remote_disk = $ipp_disk;
-    
+
     unless(defined($ipp_disk)) {
-        my_die();
+        &my_die( "Unable to generate file for $neb_uri ", $remote_id, $stack_id, $PS_EXIT_SYS_ERROR, $fail_state);
     }
 
@@ -304 +263 @@
 }
 
+# KEEP
 sub uri_to_outputs { # (ipp_disk,remote_disk) = uri_to_output(neb_uri); Appends to TRANSFER and CHECK filehandles
     my $neb_uri = shift;
     my ($ipp_disk, $remote_disk) = uri_convert( $neb_uri );
-    
-    unless (exists($file_filter{$neb_uri})) {
-        $file_filter{$neb_uri} = 1;
-        print TRANSFER "$ipp_disk\n";
-        print CHECK    "$remote_disk\n";
-    }
+
+    print TRANSFER "$ipp_disk\n";
+    print CHECK    "$remote_disk\n";
     return($ipp_disk,$remote_disk);
 }
 
+# KEEP
 sub uri_to_outputs_for_return { # (ipp_disk,remote_disk) = uri_to_outputs_for_return(neb_uri); create ipp_disk, append to RETURN and GENERATE
     my $neb_uri = shift;
     my ($ipp_disk, $remote_disk) = uri_convert_and_create( $neb_uri );
-    unless (exists($file_filter{$neb_uri})) {
-        $file_filter{$neb_uri} = 1;
-        print RETURN "$ipp_disk\n";
-        print GENERATE "$remote_disk\n";
-    }
+
+    print RETURN "$ipp_disk\n";
+    print GENERATE "$remote_disk\n";
     return($ipp_disk,$remote_disk);
 }
 
+# KEEP
 sub uri_local_to_remote { #(remote_uri) = uri_local_to_remote(local_neb_uri);
     # This needs to replace the nebulous tag with the remote root.
@@ -337 +294 @@
     return($remote_uri);
 }
- 
-sub uri_remote_to_local { #(local_neb_uri) = uri_remote_to_local(remote_uri);
-    # This needs to replace the remote root directory with the nebulous tag.
-    my $remote_uri = shift;
-    $remote_uri =~ s%${remote_root}%%;
-    my $local_uri  = "neb:///" . $remote_uri;
-    
-    return($local_uri);
-}
-
 
 sub my_die { # exit with status; my_die(message,stage_id,exit_code,exit_status);
     my $msg = shift;
-    my $id  = shift;
+    my $remote_id  = shift;
+    my $stage_id  = shift;
     my $exit_code = shift;
     my $exit_state = shift;
@@ -357 +305 @@
 
     carp($msg);
-    
-    if (defined $id and not $no_update) {
-        my $command = "remotetool -updaterun -remote_id $id";
-        $command .= " -fault $exit_code " if defined $exit_code;
+
+    if (defined $remote_id and defined $stage_id and not $no_update) {
+        my $command = "remotetool -updatecomponent -remote_id $remote_id -stage_id $stage_id";
         $command .= " -set_state $exit_state " if defined $exit_state;
         $command .= " -dbname $dbname " if defined $dbname;