Changeset 26899 for trunk/ppSub/src/ppSubReadoutPhotometry.c

Timestamp:

Feb 10, 2010, 7:42:02 PM (16 years ago)

Author:

eugene

Message:

updates from eam_branches/20091201

File:

• trunk/ppSub/src/ppSubReadoutPhotometry.c (modified) (7 diffs)

trunk/ppSub/src/ppSubReadoutPhotometry.c

@@ -24 +24 @@
 bool ppSubReadoutPhotometry(const char *name, ppSubData *data)
 {
+    bool mdok = false;
+
     psAssert(data, "Require processing data");
     pmConfig *config = data->config;    // Configuration
@@ -42 +44 @@
     }
 
-    // The PSF (measured in ppSubMakePSF) is stored on the chip->analysis of PSPHOT.INPUT
-    // In order to use an incoming PSF, it must be stored on the chip->analysis of PSPHOT.PSF.LOAD
+    // select the view of interest
     pmFPAview *view = ppSubViewReadout(); // View to readout
-    pmChip *psfInputChip = pmFPAfileThisChip(config->files, view, "PSPHOT.INPUT"); // Chip with PSF
-    psAssert (psfInputChip, "should have been generated for ppSubMakePSF");
-    pmChip *psfLoadChip = pmFPAfileThisChip(config->files, view, "PSPHOT.PSF.LOAD"); // Chip to have PSF
-    psAssert (psfLoadChip, "PSPHOT.PSF.LOAD should have been defined in ppSubCamera");
-    pmPSF *psf = psMetadataLookupPtr(NULL, psfInputChip->analysis, "PSPHOT.PSF"); // PSF for photometry
-    if (!psf) {
-        psErrorStackPrint(stderr, "No PSF available");
-        psWarning("No PSF available --- suspect bad data quality.");
-        ppSubDataQuality(data, psErrorCodeLast(), PPSUB_FILES_PHOT_SUB | PPSUB_FILES_PHOT_INV);
-        return true;
-    }
-    psMetadataAddPtr(psfLoadChip->analysis, PS_LIST_TAIL, "PSPHOT.PSF", PS_DATA_UNKNOWN | PS_META_REPLACE,
-                     "PSF from ppSubMakePSF", psf);
-
-    bool mdok = false;
 
     // psphotReadoutMinimal performs the photometry analysis on PSPHOT.INPUT; we need to move
-    // around the pointers so PSPHOT.INPUT corresponds to the output image; previously, it was
-    // equivalent to the minuend image.
-    pmReadout *inRO = pmFPAfileThisReadout(config->files, view, name); // Readout with image and sources
-    if (psMetadataLookup(inRO->analysis, "PSPHOT.SOURCES")) {
-        psMetadataRemoveKey(inRO->analysis, "PSPHOT.SOURCES");
-    }
-
+    // around the pointers so PSPHOT.INPUT corresponds to the output image of interest (on one
+    // pass this is the subtraction image, in another it is negative of the subtraction
     pmFPAfile *photFile = psMetadataLookupPtr(&mdok, config->files, "PSPHOT.INPUT"); // Photometry file
     pmFPAfile *inFile = psMetadataLookupPtr(&mdok, config->files, name); // Input file
@@ -76 +57 @@
         return false;
     }
+
+    // drop references to PSPHOT.DETECTIONS on both of these  (why is this needed for both??)
     pmReadout *photRO = pmFPAviewThisReadout(view, photFile->fpa); // Readout to photometer
-    if (psMetadataLookup(photRO->analysis, "PSPHOT.SOURCES")) {
-        psMetadataRemoveKey(photRO->analysis, "PSPHOT.SOURCES");
+    if (psMetadataLookup(photRO->analysis, "PSPHOT.DETECTIONS")) {
+        psMetadataRemoveKey(photRO->analysis, "PSPHOT.DETECTIONS");
+    }
+    pmReadout *inRO = pmFPAfileThisReadout(config->files, view, name); // Readout with image and sources
+    if (psMetadataLookup(inRO->analysis, "PSPHOT.DETECTIONS")) {
+        psMetadataRemoveKey(inRO->analysis, "PSPHOT.DETECTIONS");
     }
 
-    psMetadataAddPtr(photRO->parent->parent->analysis, PS_LIST_TAIL, "PSPHOT.PSF",
-                     PS_META_REPLACE | PS_DATA_UNKNOWN, "Point-spread function", data->psf);
-
-    psFree(photRO->analysis);
-    photRO->analysis = psMetadataAlloc();
+    // grab the PSF information from the pmFPAfile PSPHOT.PSF.LOAD
+    pmFPAfile *psfFile = psMetadataLookupPtr(&mdok, config->files, "PSPHOT.PSF.LOAD"); // PSF file
+    ppSubCopyPSF (photFile, psfFile, view);
 
     // psphotSaveImage (photFile->fpa->hdu->header, photRO->image, "findsrc.im.fits");
     // psphotSaveImage (photFile->fpa->hdu->header, photRO->variance, "findsrc.wt.fits");
     // psphotSaveImage (photFile->fpa->hdu->header, photRO->mask, "findsrc.mk.fits");
+
+    // erase the overlays from a previous psphot-related step
+    if (pmVisualIsVisual()) {
+        //      psphotVisualEraseOverlays (1, "all");
+    }
 
     if (!psphotReadoutMinimal(config, view)) {
@@ -100 +90 @@
 
     // If no sources were found, there's no error,  but we want to trigger 'bad quality'
-    psArray *sources = psMetadataLookupPtr(NULL, photRO->analysis, "PSPHOT.SOURCES"); // Sources
-    if (!sources) {
+    pmDetections *detections = psMetadataLookupPtr(NULL, photRO->analysis, "PSPHOT.DETECTIONS"); // Sources
+    if (!detections) {
         ppSubDataQuality(data, PSPHOT_ERR_DATA, PPSUB_FILES_PHOT_SUB | PPSUB_FILES_PHOT_INV);
     }
+    psArray *sources = detections->allSources;
+    psAssert (sources, "missing sources?");
 
     if (data->stats) {
@@ -118 +110 @@
 
     if (!data->quality) {
-        if (!psMetadataCopySingle(inRO->analysis, photRO->analysis, "PSPHOT.SOURCES")) {
-            psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to copy PSPHOT.SOURCES");
+        if (!psMetadataCopySingle(inRO->analysis, photRO->analysis, "PSPHOT.DETECTIONS")) {
+            psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to copy PSPHOT.DETECTIONS");
             return false;
         }
@@ -125 +117 @@
             psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to copy PSPHOT.HEADER");
             return false;
+        }
+        if (!psMetadataCopySingle(inRO->analysis, photRO->analysis, PM_DETEFF_ANALYSIS)) {
+            psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to copy Detection Efficiency");
+            return false;
+        }
+
+        // Ensure photometry information is put in the header
+        pmHDU *hdu = pmHDUFromReadout(inRO); // HDU for readout
+        if (hdu) {
+            psMetadata *photHeader = psMetadataLookupMetadata(NULL, inRO->analysis, "PSPHOT.HEADER"); // Header
+            hdu->header = psMetadataCopy(hdu->header, photHeader);
         }
     }
@@ -134 +137 @@
 }
 
-
-
-
-
 #ifdef TESTING
     // Record data about sources: not everything gets into the output CMF files
     {
         pmReadout *photRO = pmFPAviewThisReadout(view, photFile->fpa); // Readout with the sources
-        psArray *sources = psMetadataLookupPtr(NULL, photRO->analysis, "PSPHOT.SOURCES"); // Sources
+        pmDetections *detections = psMetadataLookupPtr(NULL, photRO->analysis, "PSPHOT.DETECTIONS"); // Sources
+        psArray *sources = detections->allSources;
         FILE *sourceFile = fopen("sources.dat", "w"); // File for sources
         fprintf(sourceFile,