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Changeset 25916


Ignore:
Timestamp:
Oct 21, 2009, 3:28:07 PM (17 years ago)
Author:
eugene
Message:

add option to recognize if correction is generated

File:
1 edited

Legend:

Unmodified
Added
Removed

  • trunk/ippScripts/scripts/flatcorr_proc.pl

    r25816 r25916  
    4242use Pod::Usage qw( pod2usage );
    4343
    44 my ($corr_id, $det_type, $dvodb, $camera, $region, $filter, $dbname, $workdir, $verbose, $no_update, $no_op);
     44my ($corr_id, $det_type, $dvodb, $camera, $region, $filter, $dbname, $workdir, $make_correction, $verbose, $no_update, $no_op);
    4545GetOptions(
    4646    'corr_id|i=s'      => \$corr_id,
    … …  
    5252    'dbname|d=s'       => \$dbname,# Database name
    5353    'workdir|w=s'      => \$workdir, # Working directory for output files
    54     'verbose'           => \$verbose,   # Print to stdout
     54    'make_correction'  => \$make_correction,   # Generate the correction image and save to the detrend database
     55    'verbose'          => \$verbose,   # Print to stdout
    5556    'no-update'        => \$no_update,
    5657    'no-op'            => \$no_op,
    … …  
    8687my $mdcParser = PS::IPP::Metadata::Config->new; # Parser for metadata config files
    8788
    88 # XXX either workdir needs to be non-nebulous here, or addstar / relphot need to handle
    89 # nebulous interactions...
     89# dvodb must be non-nebulous; workdir may be in nebulous
    9090my $outgrid = "$dvodb/flatcorr/$camera.$filter.$corr_id";
    9191my $outcorr = "$workdir/$camera.$filter.$corr_id";
    … …  
    143143}
    144144
    145 # get a single input exposure
    146 # flatcorr -inputexp -corr_id $corr_id -limit 1
    147 my $chip_id;
    148 {
    149     my $command = "$flatcorr -inputexp";
    150     $command .= " -corr_id $corr_id";
    151     $command .= " -limit 1";
    152     $command .= " -dbname $dbname" if defined $dbname;
    153 
    154     my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) =
    155         run(command => $command, verbose => $verbose);
    156     unless ($success) {
    157         $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR);
    158         &my_die("Unable to perform camtool: $error_code", $corr_id, $error_code);
    159     }
    160     my $metadata = $mdcParser->parse(join "", @$stdout_buf) or
    161         &my_die("Unable to parse metadata config doc", $corr_id, $PS_EXIT_PROG_ERROR);
    162 
    163     # extract the metadata for the files into a hash list
    164     my $files = parse_md_list($metadata) or
    165         &my_die("Unable to parse metadata list", $corr_id, $PS_EXIT_PROG_ERROR);
    166 
    167     # check for existence
    168     my $file = $$files[0];
    169     $chip_id = $file->{chip_id};
    170 }
    171 
    172 # get the list of imfiles for the single input exposure
    173 # flatcorr -inputimfile -chip_id $chip_id
    174 my $files;
    175 {
    176     my $command = "$flatcorr -inputimfile";
    177     $command .= " -chip_id $chip_id";
    178     $command .= " -dbname $dbname" if defined $dbname;
    179 
    180     my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) =
    181         run(command => $command, verbose => $verbose);
    182     unless ($success) {
    183         $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR);
    184         &my_die("Unable to perform camtool: $error_code", $corr_id, $error_code);
    185     }
    186     my $metadata = $mdcParser->parse(join "", @$stdout_buf) or
    187         &my_die("Unable to parse metadata config doc", $corr_id, $PS_EXIT_PROG_ERROR);
    188 
    189     # extract the metadata for the files into a hash list
    190     $files = parse_md_list($metadata) or
    191         &my_die("Unable to parse metadata list", $corr_id, $PS_EXIT_PROG_ERROR);
    192 }
    193 
    194 # set up the detrend run to store the corrected imfiles
    195 my $det_id;
    196 {
    197     # get the filelevel from one of these chips
    198     my $file = $$files[0];
    199 
    200     my $filelevel = $file->{filelevel};
    201     my $telescope = $file->{telescope};
    202 
    203     my $command = "$dettool -register_detrend";
    204     $command .= " -det_type $det_type";
    205     $command .= " -filelevel $filelevel";
    206     $command .= " -workdir $workdir";
    207     $command .= " -inst $camera";
    208     $command .= " -telescope $telescope";
    209     $command .= " -filter $filter";
    210     $command .= " -dbname $dbname" if defined $dbname;
    211 
    212     ## the flat-field correction is valid for any airmass, exptime, solangle
    213     ## for now, we assume the posangle and ccd_temp are not important
    214     ## XXX someone needs to set the use_begin, use_end values??
    215     ## XXX inherit a label from the flatcorrRun?
    216 
    217     my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) =
    218         run(command => $command, verbose => $verbose);
    219 
    220     unless ($success) {
    221         $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR);
    222         &my_die ("Unable to register new detrend: $error_code", $corr_id, $PS_EXIT_PROG_ERROR);
    223     }
    224 
    225     my $metadata = $mdcParser->parse(join "", @$stdout_buf) or
    226         &my_die("Unable to parse metadata config doc", $corr_id, $PS_EXIT_PROG_ERROR);
    227 
    228     # extract the metadata for the files into a hash list
    229     my $output = parse_md_list($metadata) or
    230         &my_die("Unable to parse metadata list", $corr_id, $PS_EXIT_PROG_ERROR);
    231 
    232     # $file = $$output[0];
    233     $det_id = $$output[0]->{det_id};
    234 }
    235 
    236 # use input chip image as a reference image
    237 foreach my $file (@$files) {
    238     # create the detrend correction for the imfiles based on the input imfiles
    239     my $reffile = $file->{uri};
    240     my $class_id = $file->{class_id};
    241 
    242     my $uri = $ipprc->filename("DVOCORR.OUTPUT", $outcorr, $class_id);
    243     unless ($uri) {
    244         &my_die ("Unable to find DVOCORR.OUTPUT in filerules", $corr_id, $PS_EXIT_PROG_ERROR);
    245     }
    246 
    247     my $command = "$dvoMakeCorr $outcorr";
    248     $command .= " -file $outgrid.fits";
    249     $command .= " -ref $reffile";
    250 
    251     my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) =
    252         run(command => $command, verbose => $verbose);
    253 
    254     unless ($success) {
    255         $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR);
    256         &my_die ("Unable to perform dvoMakeCorr: $error_code", $corr_id, $PS_EXIT_PROG_ERROR);
    257     }
    258 
    259     # register the detrend correction imfile
    260     $command = "$dettool -register_detrend_imfile";
    261     $command .= " -det_id $det_id";
    262     $command .= " -class_id $class_id";
    263     $command .= " -uri $uri";
    264     $command .= " -dbname $dbname" if defined $dbname;
    265 
    266     ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) =
    267         run(command => $command, verbose => $verbose);
    268 
    269     unless ($success) {
    270         $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR);
    271         &my_die ("Unable to register new detrend: $error_code", $corr_id, $PS_EXIT_PROG_ERROR);
    272     }
    273 }
    274 
    275 # set the detrun state to 'stop'
    276 {
     145if ($make_correction) {
     146
     147    # get a single input exposure
     148    # flatcorr -inputexp -corr_id $corr_id -limit 1
     149    my $chip_id = &get_chip_id();
     150
     151    # get the list of imfiles for the single input exposure
     152    # flatcorr -inputimfile -chip_id $chip_id
     153    my $files = &get_imfiles($chip_id);
     154
     155    # set up the detrend run to store the corrected imfiles
     156    my $det_id = &get_det_id($$files[0]);
     157
     158    # make the (full-sized) detrend correction images
     159    &make_detrend_imfiles($det_id, $files);
     160
     161    # set the detrun state to 'stop'
    277162    my $command = "$dettool -updatedetrun";
    278163    $command .= " -det_id $det_id";
    … …  
    311196}
    312197
     198# get a single input exposure
     199# flatcorr -inputexp -corr_id $corr_id -limit 1
     200sub get_chip_id {
     201
     202    my $command = "$flatcorr -inputexp";
     203    $command .= " -corr_id $corr_id";
     204    $command .= " -limit 1";
     205    $command .= " -dbname $dbname" if defined $dbname;
     206
     207    my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) =
     208        run(command => $command, verbose => $verbose);
     209    unless ($success) {
     210        $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR);
     211        &my_die("Unable to perform camtool: $error_code", $corr_id, $error_code);
     212    }
     213    my $metadata = $mdcParser->parse(join "", @$stdout_buf) or
     214        &my_die("Unable to parse metadata config doc", $corr_id, $PS_EXIT_PROG_ERROR);
     215
     216    # extract the metadata for the files into a hash list
     217    my $files = parse_md_list($metadata) or
     218        &my_die("Unable to parse metadata list", $corr_id, $PS_EXIT_PROG_ERROR);
     219
     220    # check for existence
     221    my $file = $$files[0];
     222    my $chip_id = $file->{chip_id};
     223
     224    return $chip_id;
     225}
     226
     227# get the list of imfiles for the single input exposure
     228# flatcorr -inputimfile -chip_id $chip_id
     229sub get_imfiles {
     230    my $chip_id = shift;
     231
     232    my $command = "$flatcorr -inputimfile";
     233    $command .= " -chip_id $chip_id";
     234    $command .= " -dbname $dbname" if defined $dbname;
     235
     236    my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) =
     237        run(command => $command, verbose => $verbose);
     238    unless ($success) {
     239        $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR);
     240        &my_die("Unable to perform camtool: $error_code", $corr_id, $error_code);
     241    }
     242    my $metadata = $mdcParser->parse(join "", @$stdout_buf) or
     243        &my_die("Unable to parse metadata config doc", $corr_id, $PS_EXIT_PROG_ERROR);
     244
     245    # extract the metadata for the files into a hash list
     246    my $files = parse_md_list($metadata) or
     247        &my_die("Unable to parse metadata list", $corr_id, $PS_EXIT_PROG_ERROR);
     248
     249    return $files;
     250}
     251
     252# set up the detrend run to store the corrected imfiles
     253sub get_det_id {
     254    # get the filelevel from the supplied chip
     255    my $file = shift;
     256
     257    my $filelevel = $file->{filelevel};
     258    my $telescope = $file->{telescope};
     259
     260    my $command = "$dettool -register_detrend";
     261    $command .= " -det_type $det_type";
     262    $command .= " -filelevel $filelevel";
     263    $command .= " -workdir $workdir";
     264    $command .= " -inst $camera";
     265    $command .= " -telescope $telescope";
     266    $command .= " -filter $filter";
     267    $command .= " -dbname $dbname" if defined $dbname;
     268
     269    ## the flat-field correction is valid for any airmass, exptime, solangle
     270    ## for now, we assume the posangle and ccd_temp are not important
     271    ## XXX someone needs to set the use_begin, use_end values??
     272    ## XXX inherit a label from the flatcorrRun?
     273
     274    my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) =
     275        run(command => $command, verbose => $verbose);
     276
     277    unless ($success) {
     278        $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR);
     279        &my_die ("Unable to register new detrend: $error_code", $corr_id, $PS_EXIT_PROG_ERROR);
     280    }
     281
     282    my $metadata = $mdcParser->parse(join "", @$stdout_buf) or
     283        &my_die("Unable to parse metadata config doc", $corr_id, $PS_EXIT_PROG_ERROR);
     284
     285    # extract the metadata for the files into a hash list
     286    my $output = parse_md_list($metadata) or
     287        &my_die("Unable to parse metadata list", $corr_id, $PS_EXIT_PROG_ERROR);
     288
     289    # $file = $$output[0];
     290    my $det_id = $$output[0]->{det_id};
     291    return $det_id;
     292}
     293
     294# use input chip images as reference images to make the detrend correction images
     295sub make_detrend_imfiles {
     296    my $det_id = shift;
     297    my $files = shift;
     298
     299    foreach my $file (@$files) {
     300        # create the detrend correction for the imfiles based on the input imfiles
     301        my $reffile = $file->{uri};
     302        my $class_id = $file->{class_id};
     303
     304        my $uri = $ipprc->filename("DVOCORR.OUTPUT", $outcorr, $class_id);
     305        unless ($uri) {
     306            &my_die ("Unable to find DVOCORR.OUTPUT in filerules", $corr_id, $PS_EXIT_PROG_ERROR);
     307        }
     308
     309        my $command = "$dvoMakeCorr $outcorr";
     310        $command .= " -file $outgrid.fits";
     311        $command .= " -ref $reffile";
     312
     313        my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) =
     314            run(command => $command, verbose => $verbose);
     315
     316        unless ($success) {
     317            $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR);
     318            &my_die ("Unable to perform dvoMakeCorr: $error_code", $corr_id, $PS_EXIT_PROG_ERROR);
     319        }
     320
     321        # register the detrend correction imfile
     322        $command = "$dettool -register_detrend_imfile";
     323        $command .= " -det_id $det_id";
     324        $command .= " -class_id $class_id";
     325        $command .= " -uri $uri";
     326        $command .= " -dbname $dbname" if defined $dbname;
     327
     328        ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) =
     329            run(command => $command, verbose => $verbose);
     330
     331        unless ($success) {
     332            $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR);
     333            &my_die ("Unable to register new detrend: $error_code", $corr_id, $PS_EXIT_PROG_ERROR);
     334        }
     335    }
     336}
     337
    313338sub my_die
    314339{
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