Changeset 19069

Timestamp:

Aug 14, 2008, 2:44:44 PM (18 years ago)

Author:

eugene

Message:

add option to do first readout of 3D cell (or skip)

Location:

trunk/ppStats/src

Files:

• ppStats.h (modified) (1 diff)
• ppStatsChip.c (modified) (1 diff)
• ppStatsData.c (modified) (1 diff)
• ppStatsSetupFromRecipe.c (modified) (1 diff)

trunk/ppStats/src/ppStats.h

@@ -21 +21 @@
     psList *summary;                    // Summary statistics to calculate
     // Options for input data
+    bool doFirstReadout3D;              // for 3D data, use the first readout?
     float sample;                       // Fraction of cell to sample for statistics
     psMaskType maskVal;                 // Mask value for images

trunk/ppStats/src/ppStatsChip.c

@@ -77 +77 @@
 
         // XXX for now, skip the video cells (cell->readouts->n > 1)
-        if (cell->readouts->n > 1) {
+        if ((cell->readouts->n > 1) && !data->doFirstReadout3D){
           psWarning ("Skipping Video Cell for ppStatsCell");
           continue;

trunk/ppStats/src/ppStatsData.c

@@ -45 +45 @@
     data->sample = 0;
     data->maskVal = 0;
+    data->doFirstReadout3D = false;
     data->chips = psListAlloc(NULL);
     data->cells = psListAlloc(NULL);

trunk/ppStats/src/ppStatsSetupFromRecipe.c

@@ -127 +127 @@
     }
 
+    bool doFirst = psMetadataLookupBool(&mdok, recipe, "DO.FIRST.READOUT.3D"); // Sample fraction
+    if (mdok) {
+        data->doFirstReadout3D = doFirst;
+    } 
+
     // set the mask value used for stand-alone analyses.
     if (data->maskVal == 0) {